[Morishima Akiko] Hanjuku Joshi Vol. 1 [English]

God Damn, I think I have a cavity after that.

It's not about trans issues, it's about not being thought of individually. Yae is frustrated at being pigeonholed into the "girly" label. She is girly, but it's a broad label and doesn't indicate anything particularly distinct for her to appreciate about herself. Her idea that being a boy would be better is not due to gender dysphoria, but due to choosing something that's completely different to peoples' current and very generic impressions of her. Chitose's appreciation of Yae for who she is leads Yae to accept herself.

Wow, I remember when I first read this almost ten years ago, I was still a student, and now I have the books on my bookshelf, one of the best yuri with a plot I read.

i am purified

This belongs on a general manga site not here. You'll have an easier time nutting to a drawing of four circles touching each other.

There's always the possibility that Yae is a FtM trans man considering just how much dysphoria she feels from the feminine parts of her body and when people characterize her as feminine